Neymar and Lionel Messi were among the players booed after PSG were taken out of the Heroes Association by Genuine Madrid on Wednesday.
Kylian Mbappe opened the scoring at the Parc des Sovereigns, before Neymar multiplied the hosts' lead after the break.
Leandro Paredes added a third as PSG extended their lead at the highest point of the table to 15 places.
Mauricio Pochettino's players were met by a chilly gathering as they took to the field following their exit from the Heroes Association.
It follows calls by certain fans for club president Nasser Al-Khelaifi and brandishing chief Leonardo to leave.
Pochettino's side can now just win Ligue 1 this season and the Argentine said he was miserable about the environment at the game.
"Nobody who loves PSG, its tones, and who feels the dissatisfaction of disposal, can encounter it in differently," he said.
"Pity. I feel that is the right word. The pity of encountering a midday like this here at the Parc des Rulers.
"Messi and Neymar? We are completely impacted, we comprehend the mistake and dissatisfaction, which we likewise share. Be that as it may, we are mindful. We just need to accept it collectively and we will be joined until the end."
Focus back Presnel Kimpembe added: "We get their failure and their disdain however we need to additional forward to lift our heads up and bring home the Ligue 1 championship.
"We as a whole are to blame, we're a group. Now is the right time to show that we have character and stay together."
Neymar and Messi's previous Barcelona partners Luis Suarez and Cesc Fabregas have since both posted messages of help for the pair on their online media stages.
Suarez stated "As usual, football has no memory", while Fabregas tweeted: "Football has no memory at all… it's a disgrace."
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